OU E.coli Gene Expression Database

Welcome to the E. coli Community's Gene Expression Database (GenExpDB)

Hosted by the University of Oklahoma

ACCESSION	EXPERIMENT TITLE
GSE7	Tryptophan metabolism response in E. coli

EXPERIMENTS

EXPNAME	SAMPLES	TIMEPOINT	CHANNELS	TEST COL	CNTL COL	LOG	NORM	USE RMA DATA	TYPE
5 min in minimal medium +0.2% glu / 0 min in minimal medium +0.2% glu	GSM515	5	2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
15 min in minimal medium +0.2% glu / 0 min in minimal medium +0.2% glu	GSM516	15	2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
30 min in minimal medium +0.2% glu / 0 min in minimal medium +0.2% glu	GSM517	30	2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
60 min in minimal medium +0.2% glu / 0 min in minimal medium +0.2% glu	GSM519	60	2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
5 min in minimal medium +0.2% glu + 50ug/ml Trp / 0 min in minimal medium +0.2% glu	GSM531	5	2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
15 min in minimal medium +0.2% glu + 50ug/ml Trp / 0 min in minimal medium +0.2% glu	GSM532	15	2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
60 min in minimal medium +0.2% glu + 50ug/ml Trp / 0 min in minimal medium +0.2% glu	GSM534	60	2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
5 min 10 ug/ml indole acrylate minimal medium / 0 min minimal medium	GSM557	5	2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
10 min 10 ug/ml indole acrylate minimal medium / 0 min minimal medium	GSM558	10	2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
30 min 10 ug/ml indole acrylate minimal medium / 0 min minimal medium	GSM559	30	2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
60 min 10 ug/ml indole acrylate minimal medium / 0 min minimal medium	GSM560	60	2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
5 min 15 ug/ml indole acrylate minimal medium / 0 min minimal medium	GSM561	5	2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
10 min 15 ug/ml indole acrylate minimal medium / 0 min minimal medium	GSM562	10	2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
30 min 15 ug/ml indole acrylate minimal medium / 0 min minimal medium	GSM563	30	2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
60 min 15 ug/ml indole acrylate minimal medium / 0 min minimal medium	GSM564	60	2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
tnaA minimal +50 ug/ml Trp / genomic DNA	GSM513		2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
trpR tnaA minimal +50 ug/ml Trp/ genomic DNA	GSM514		2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
tnaA trpR minimal +50 ug/ml Trp / tnaA minimal +Trp 50ug/ml	GSM536		2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
trpR minimal + 0.2% glucose / WT minimal + 0.2% glucose	GSM537		2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
trpR + 50 ug/ml Trp / WT + 50 ug/ml Trp	GSM538		2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
trpEA trpR minimal +50 ug/ml Trp / trpEA minimal +50ug/ml Trp	GSM540		2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
tnaA trpA46PR9 = trpA bradytroph minimal / tnaA minimal	GSM541		2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
W3110 wt + trp / W3110 wt - trp	GSM535		2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
W3110 trpR2 + trp / W3110 trpR2 - trp	GSM539		2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
60 min minimal medium + 0.2% glu / 0 min minimal medium + 0.2% glu	GSM555,GSM570	60	2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
60 min minimal medium + 0.2% glu+ 50ug/ml Trp / 0 min minimal medium + 0.2% glu	GSM556,GSM565	60	2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
30 min in minimal medium + 0.2% glu + 50ug/ml Trp / 0 min in minimal medium + 0.2% glu	GSM533	30	2	CH2D_MEAN	CH1D_MEAN	Yes	Yes	No	mbplot
Recs: 27

SAMPLES

ID	PLATFORM	SAMPLE NAME	ID	PLATFORM	SAMPLE NAME	ID	PLATFORM	SAMPLE NAME
GSM513	GPL17	tnaA2,W3110 minimal +Trp 50ug/ml vs. dnaC genomic DNA	GSM535	GPL17	wt +trp vs. -trp, min+.2%glucose, W3110	GSM558	GPL16	cyc2
GSM514	GPL17	trpR2tnaA2,W3110 minimal +Trp 50ug/ml vs. dnaC genomic DNA	GSM536	GPL17	tnaA2trpR2 vs. tnaA2, W3110 min +Trp 50ug/ml	GSM559	GPL16	cyc3
GSM515	GPL17	5' vs 0' in minimal medium +0.2% glu	GSM537	GPL17	trpR2 vs. wt, min+.2%glucose, W3110	GSM560	GPL16	cyc4
GSM516	GPL17	15' vs 0' in minimal medium +0.2% glu	GSM538	GPL17	trpR2+50ug/ml Trp vs. wt+50ug/ml Trp	GSM561	GPL16	cyd1
GSM517	GPL17	30' vs 0' in minimal medium +0.2% glu	GSM539	GPL17	trpR2 +trp vs. -trp, min+.2%glucose, W3110	GSM562	GPL16	cyd2
GSM519	GPL17	60' vs 0' in minimal medium +0.2% glu, II	GSM540	GPL17	trpEA2trpR2 vs. trpEA2, W3110 min +Trp 50ug/ml	GSM563	GPL16	cyd3
GSM531	GPL17	5'+50ug/ml Trp vs 0' in min med +0.2% glu	GSM541	GPL17	tnaA2trpA46PR9 vs. tnaA2, W3110 min	GSM564	GPL16	cyd4
GSM532	GPL17	15'+50ug/ml Trp vs 0' in min med +0.2% glu	GSM555	GPL16	cy_a4	GSM565	GPL17	60' vs. 0', 50 ug/ml tryptophan, minimal +02% glu
GSM533	GPL17	30'+50ug/ml Trp vs 0' in min med +0.2% glu	GSM556	GPL17	cy_b4	GSM570	GPL16	60' vs 0' in minimal medium +0.2% glu
GSM534	GPL17	60'+50ug/ml Trp vs 0' in min med +0.2% glu	GSM557	GPL16	cyc1
Recs: 29

2.9372 secs