| EXPNAME |
SAMPLES |
TIMEPOINT |
CHANNELS |
TEST COL |
TEST BKGD |
CNTL COL |
CNTL BKGD |
LOG |
NORM |
USE RMA DATA |
TYPE |
| mRNA abundance (wt in LB, norfloxacin for 30 min) / Genomic DNA from dnaC(ts) mutant (dye swap) | GSM30259,GSM30260,GSM30261,GSM30262 | | 2 | Cy3_Intensity | | Cy5_Intensity | | Yes | Yes | No | mbplot |
| mRNA abundance (gyrA D82G, LB) / mRNA abundance (wt, LB) | GSM30330,GSM30331,GSM30332,GSM30333 | | 2 | Cy5_Intensity | | Cy3_Intensity | | Yes | Yes | No | mbplot |
| mRNA abundance (gyrA D82G, LB) / mRNA abundance (wt, LB) (dye swap) | GSM30334,GSM30335,GSM30336,GSM30337 | | 2 | Cy3_Intensity | | Cy5_Intensity | | Yes | Yes | No | mbplot |
| mRNA abundance (wt, M9) / Genomic DNA from dnaC(ts) mutant | GSM30338,GSM30339,GSM30340,GSM30341 | | 2 | Cy5_Intensity | | Cy3_Intensity | | Yes | Yes | No | mbplot |
| mRNA abundance WT on LB / Genomic DNA from dnaC(ts) mutant | GSM30231,GSM30232,GSM30233,GSM30234 | | 2 | Cy3_Intensity | | Cy5_Intensity | | Yes | Yes | No | mbplot |
| mRNA abundance WT on LB / Genomic DNA from dnaC(ts) mutant (dye swap) | GSM30235,GSM30236,GSM30237,GSM30238 | | 2 | Cy3_Intensity | | Cy5_Intensity | | Yes | Yes | No | mbplot |
| mRNA abundance gyrA D82G mutant on LB / Genomic DNA from dnaC(ts) mutant | GSM30239,GSM30240,GSM30241,GSM30242 | | 2 | Cy5_Intensity | | Cy3_Intensity | | Yes | Yes | No | mbplot |
| mRNA abundance gyrA D82G mutant on LB / Genomic DNA from dnaC(ts) mutant (dye swap) | GSM30243,GSM30244,GSM30245,GSM30246 | | 2 | Cy3_Intensity | | Cy5_Intensity | | Yes | Yes | No | mbplot |
| mRNA abundance (wt in LB, norfloxacin for 10 min) / Genomic DNA from dnaC(ts) mutant | GSM30247,GSM30248,GSM30249,GSM30250 | | 2 | Cy5_Intensity | | Cy3_Intensity | | Yes | Yes | No | mbplot |
| mRNA abundance (wt in LB, norfloxacin for 10 min) / Genomic DNA from dnaC(ts) mutant (dye swap) | GSM30251,GSM30252,GSM30253,GSM30254 | | 2 | Cy3_Intensity | | Cy5_Intensity | | Yes | Yes | No | mbplot |
| mRNA abundance (wt in LB, norfloxacin for 30 min) / Genomic DNA from dnaC(ts) mutant | GSM30255,GSM30256,GSM30257,GSM30258 | | 2 | Cy5_Intensity | | Cy3_Intensity | | Yes | Yes | No | mbplot |
| Recs: 11 |
| ID |
PLATFORM |
SAMPLE NAME |
|
ID |
PLATFORM |
SAMPLE NAME |
|
ID |
PLATFORM |
SAMPLE NAME |
|
| GSM30231 |
GPL1436 |
mRNA abundance (wild type, LB) |
|
GSM30246 |
GPL1436 |
mRNA abundance (gyrA D82G mutant, LB) no. 8 |
|
GSM30261 |
GPL1436 |
mRNA abundance (wt in LB, norfloxacin for 30 min) no. 7 |
|
| GSM30232 |
GPL1436 |
mRNA abundance (wild type, LB) no. 2 |
|
GSM30247 |
GPL1436 |
mRNA abundance (wild type, LB, norfloxacin treat for 10 min) no. 1 |
|
GSM30262 |
GPL1436 |
mRNA abundance (wt in LB, norfloxacin for 30 min) no. 8 |
|
| GSM30233 |
GPL1436 |
mRNA abundance (wild type, LB) no. 3 |
|
GSM30248 |
GPL1436 |
mRNA abundance (wt in LB, norfloxacin for 10 min) no. 2 |
|
GSM30330 |
GPL1436 |
Transcription profile of wild type and gyrA (D82G) mutant |
|
| GSM30234 |
GPL1436 |
mRNA abundance (wild type, LB) no. 4 |
|
GSM30249 |
GPL1436 |
mRNA abundance (wt in LB, norfloxacin for 10 min) no. 3 |
|
GSM30331 |
GPL1436 |
Transcription profile of wild type and gyrA (D82G) mutant no.2 |
|
| GSM30235 |
GPL1436 |
mRNA abundance (wild type, LB) no. 5 |
|
GSM30250 |
GPL1436 |
mRNA abundance (wt in LB, norfloxacin for 10 min) no. 4 |
|
GSM30332 |
GPL1436 |
Transcription profile of wild type and gyrA (D82G) mutant no.3 |
|
| GSM30236 |
GPL1436 |
mRNA abundance (wild type, LB) no. 6 |
|
GSM30251 |
GPL1436 |
mRNA abundance (wt in LB, norfloxacin for 10 min) no. 5 |
|
GSM30333 |
GPL1436 |
Transcription profile of wild type and gyrA (D82G) mutant no.4 |
|
| GSM30237 |
GPL1436 |
mRNA abundance (wild type, LB) no. 7 |
|
GSM30252 |
GPL1436 |
mRNA abundance (wt in LB, norfloxacin for 10 min) no. 6 |
|
GSM30334 |
GPL1436 |
Transcription profile of wild type and gyrA (D82G) mutant no.5 |
|
| GSM30238 |
GPL1436 |
mRNA abundance (wild type, LB) no. 8 |
|
GSM30253 |
GPL1436 |
mRNA abundance (wt in LB, norfloxacin for 10 min) no. 7 |
|
GSM30335 |
GPL1436 |
Transcription profile of wild type and gyrA (D82G) mutant no.6 |
|
| GSM30239 |
GPL1436 |
mRNA abundance (gyrA D82G mutant, LB) no. 1 |
|
GSM30254 |
GPL1436 |
mRNA abundance (wt in LB, norfloxacin for 10 min) no. 8 |
|
GSM30336 |
GPL1436 |
Transcription profile of wild type and gyrA (D82G) mutant no.7 |
|
| GSM30240 |
GPL1436 |
mRNA abundance (gyrA D82G mutant, LB) no. 2 |
|
GSM30255 |
GPL1436 |
mRNA abundance (wt in LB, norfloxacin for 30 min) no. 1 |
|
GSM30337 |
GPL1436 |
Transcription profile of wild type and gyrA (D82G) mutant no.8 |
|
| GSM30241 |
GPL1436 |
mRNA abundance (gyrA D82G mutant, LB) no. 3 |
|
GSM30256 |
GPL1436 |
mRNA abundance (wt in LB, norfloxacin for 30 min) no. 2 |
|
GSM30338 |
GPL1436 |
mRNA abundance (wt, M9) no. 1 |
|
| GSM30242 |
GPL1436 |
mRNA abundance (gyrA D82G mutant, LB) no. 4 |
|
GSM30257 |
GPL1436 |
mRNA abundance (wt in LB, norfloxacin for 30 min) no. 3 |
|
GSM30339 |
GPL1436 |
mRNA abundance (wt, M9) no. 2 |
|
| GSM30243 |
GPL1436 |
mRNA abundance (gyrA D82G mutant, LB) no. 5 |
|
GSM30258 |
GPL1436 |
mRNA abundance (wt in LB, norfloxacin for 30 min) no. 4 |
|
GSM30340 |
GPL1436 |
mRNA abundance (wt, M9) no. 3 |
|
| GSM30244 |
GPL1436 |
mRNA abundance (gyrA D82G mutant, LB) no. 6 |
|
GSM30259 |
GPL1436 |
mRNA abundance (wt in LB, norfloxacin for 30 min) no. 5 |
|
GSM30341 |
GPL1436 |
mRNA abundance (wt, M9) no. 4 |
|
| GSM30245 |
GPL1436 |
mRNA abundance (gyrA D82G mutant, LB) no. 7 |
|
GSM30260 |
GPL1436 |
mRNA abundance (wt in LB, norfloxacin for 30 min) no. 6 |
|
| Recs: 44 |
