OU E.coli Gene Expression Database

Welcome to the E. coli Community's Gene Expression Database (GenExpDB)

Hosted by the University of Oklahoma

ACCESSION	EXPERIMENT TITLE
GSE9	UV Exposure in Wild-Type and SOS-Deficient E. coli

EXPERIMENTS

EXPNAME	SAMPLES	TIMEPOINT	CHANNELS	TEST COL	TEST BKGD	CNTL COL	CNTL BKGD	LOG	NORM	USE RMA DATA	TYPE
lexA 0 min before UV treatment / WT 0 min before UV treatment	GSM549	0	2	CH2D_MEAN		CH1D_MEAN		Yes	Yes	No	mbplot
WT 5 min after 1 min UV treatment / WT 0 min before UV treatment	GSM510	5	2	CH1D_MEAN		CH2D_MEAN		Yes	Yes	No	mbplot
WT 10 min after 1 min UV treatment / WT 0 min before UV treatment	GSM506	10	2	CH1D_MEAN		CH2D_MEAN		Yes	Yes	No	mbplot
WT 20 min untreated cells / WT 0 min before UV treatment	GSM507	20	2	CH1D_MEAN		CH2D_MEAN		Yes	Yes	No	mbplot
WT 20 min after 1 min UV treatment / WT 0 min before UV treatment	GSM508	20	2	CH1D_MEAN		CH2D_MEAN		Yes	Yes	No	mbplot
lexA 5 min after 1 min UV treatment / WT 0 min before UV treatment	GSM547	5	2	CH2D_MEAN		CH1D_MEAN		Yes	Yes	No	mbplot
WT 40 min after 1 min UV treatment / WT 0 min before UV treatment	GSM509	40	2	CH1D_MEAN		CH2D_MEAN		Yes	Yes	No	mbplot
WT 60 min untreated cells / WT 0 min before UV treatment	GSM511	60	2	CH1D_MEAN		CH2D_MEAN		Yes	Yes	No	mbplot
WT 60 min after 1 min UV treatment / WT 0 min before UV treatment	GSM512	60	2	CH1D_MEAN		CH2D_MEAN		Yes	Yes	No	mbplot
lexA 10 min after 1 min UV treatment / WT 0 min before UV treatment	GSM544	10	2	CH2D_MEAN		CH1D_MEAN		Yes	Yes	No	mbplot
lexA 20 min untreated cells / WT 0 min before UV treatment	GSM542	20	2	CH2D_MEAN		CH1D_MEAN		Yes	Yes	No	mbplot
lexA 20 min after 1 min UV treatment / WT 0 min before UV treatment	GSM545	20	2	CH2D_MEAN		CH1D_MEAN		Yes	Yes	No	mbplot
lexA 40 min after 1 min UV treatment / WT 0 min before UV treatment	GSM546	40	2	CH2D_MEAN		CH1D_MEAN		Yes	Yes	No	mbplot
lexA 60 min after 1 min UV treatment / WT 0 min before UV treatment	GSM548	60	2	CH2D_MEAN		CH1D_MEAN		Yes	Yes	No	mbplot
lexA 60 min untreated cells / WT 0 min before UV treatment	GSM543	60	2	CH2D_MEAN		CH1D_MEAN		Yes	Yes	No	mbplot
Recs: 15

SAMPLES

ID	PLATFORM	SAMPLE NAME		ID	PLATFORM	SAMPLE NAME		ID	PLATFORM	SAMPLE NAME
GSM506	GPL17	10min after UVtreatment 1', 40J, MG1655 in Davis+0.4%glu		GSM511	GPL17	60min UVtreatment control, MG1655 in Davis+0.4%glu		GSM545	GPL18	lexA 20' after UV vs. 0', MG1655
GSM507	GPL17	20min UVtreatment control, MG1655 in Davis+0.4%glu		GSM512	GPL17	60min after UVtreatment 1, 40J, MG1655 in Davis+0.4%glu		GSM546	GPL18	lexA 40' after UV vs. 0', MG1655
GSM508	GPL17	20min after UVtreatment 1', 40J, MG1655 in Davis+0.4%glu		GSM542	GPL18	lexA 20' after NOuv vs. 0', MG1655		GSM547	GPL18	lexA 5' after UV vs. 0', MG1655
GSM509	GPL17	40min after UVtreatment 1, 40J, MG1655 in Davis+0.4%glu		GSM543	GPL18	lexA 60' after NOuv vs. 0', MG1655		GSM548	GPL18	lexA 60' after UV vs. 0', MG1655
GSM510	GPL17	5min after UVtreatment 1, 40J, MG1655 in Davis+0.4%glu		GSM544	GPL18	lexA 10' after UV vs. 0', MG1655		GSM549	GPL18	lexA vs. wt, before UV treatment, MG1655
Recs: 15

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OU Bioinformatics Core Facility @ Advanced Center for Genome Technology | updated:22 Jan 2009