OUBCF
Welcome to the E. coli Community's Gene Expression Database (GenExpDB)
Hosted by the University of Oklahoma
Instructions:  Search E. coli GenExpDB using either gene, b-number or location (multiple entries separate by comma or space).
         Example: edd • b3517 • laca,lacy,lacz • 416366 (location) • reset
Search by: Operon Regulon Sigma Text Experiment
 
lacZ
b0344
                                                                                                                                                                                                                                                       
                                                                                                                                                                                                                                                       
                                                                                                                                                                                                                                                       
                                                                                                                                                                                                                                                       
                                                                                                                                                                                                                                                       
Heatmap Legend:    Gene Expression Ratios are displayed colorimetrically. Mouseover heatmap bar to display the experiment information, click to plot experiment data. Click Options to change display and query parameters.
 
cynX → 102 ← lacA 65 ← lacY 51 ← lacZ 122 ← lacI 76 ← mhpR 190 mhpA →
META LINKS GENE LOCUS FEATURE SYNONYMS OLD LOCUSTAG LEFT END RIGHT END DIR OPERON REGULATED BY SIGMA MULTIFUN PRODUCT FUNCTION NOTE
lacZ b0344 gene;CDS;mat_peptide ECK0341, JW0335 362455;362458 365529;365526 ccw lacZYA crp+-, hns-, lacI- rpoD 1.1.1.14, 7.1 beta-D-galactosidase enzyme; Degradation of small molecules: Carbon compounds GO_component: cytoplasm [GO ID 0005737]; GO_process: carbohydrate catabolic process [GO ID 0016052]
     
  ACCESSION     INSTITUTION_[PI]     REFERENCE     ACCESSION_TITLE     EXPERIMENT_DESIGN     ARRAY_DESIGN     STRAIN     PLATFORM   DATA
  GSE7 Stanford University School of Medicine [Charles Yanofsk... Khodursky, et al, 11027315 Tryptophan metabolism response in E. coli Time Series; L-tryptophan; i... non-commercial; microarray K-12 GPL16 GPL17 data
  GSE9 Stanford University [Justin Courcelle] Courcelle, et al, 11333217 UV Exposure in Wild-Type and SOS-Deficient E. coli Time Series; UV light; stres... non-commercial; microarray K-12 GPL17 GPL18 data
  GSE33 NIDDK [Daniel Camerini-Otero] Khil, et al, 11967071 E. coli response to MMC Time Series; mitomycin C; st... commercial; Sigma-Genosy... K-12 GPL102 data
  GSE533 University of California Irvine [Albert Bennett] Riehle, et al, 12672900 High temperature adapted coli expression evolution in chemostat at 41... commercial; Sigma-Genosy... B GPL189 data
  GSE1121 University of California San Diego [Bernhard Palsson] Covert, et al, 15129285 changes of global gene expression in E. coli dur... aerobic; anaerobic; oxygen s... commercial; Affymetrix; ... K-12 GPL199 data
  GSE1154 Institut fur Genetik [Christian Schloetterer] Harr, et al, 16981998 16432259 F plasmid induced changes in expression levels in E. coli F-plasmid in MG1655, DH5-alpha commercial; Affymetrix G... K-12 GPL73 data
  GSE1421 University of Birmingham [David Grainger] Grainger, et al, 15466047 MelR experiment 1 melibiose non-commercial; Operon E... K-12 GPL1246 data
  GSE1730 University of Minnesota [Arkady Khodursky] Jeong, et al, 15535862 mRNA abundance from wild type norfloxacin; gyrA non-commercial; microarray K-12 GPL1436 data
  GSE1780 University of Birmingham [Jon Hobman ] Kershaw, et al, 15817786 The expression profile of Escherichia coli K-12 ... copper non-commercial; Operon E... K-12 GPL1246 data
  GSE1981 MIT [Anthony Sinskey] Boccazzi, et al, 15821913 Gene Expression profiles of E.coli grown in LB a... minimal medium non-commercial; 50mers o... K-12 GPL1325 data
  GSE2037 University of Wisconsin-Madison [Frederick Blattner] Liu, et al, 15705577 carbon utilization in E. coli glucose; glycerol; succinate... commercial; Affymetrix; ... K-12 GPL199 data
  GSE2095 University of Sheffield [Robert Poole] Flatley, et al, 15647275 Transcriptional responses of Escherichia coli to... S-nitrosoglutathione; aerobi... commercial; MWG E. coli ... K-12 GPL534 data
  GSE2129 University of Sheffield [Robert Poole] Flatley, et al, 15647275 Transcriptional responses of Anaerobically grown... S-nitrosoglutathione; anaero... commercial; MWG E. coli ... K-12 GPL534 data
  GSE2140 Mcardle Laboratory for Cancer Research [Richard Burgess... Zhao, et al, 15757896 sigma32 over-expression in E. coli Time Series; rpoH overexpres... commercial; Affymetrix; ... K-12 GPL199 data
  GSE2694 University of Minnesota [Arkady Khodursky] Martinez-Vaz, et al, 15929794 Comparison of IS5 Deletion mutant to E.coli Moti... insH; non-motile mutant non-commercial; microarray K-12 GPL2101 GPL2109 GPL2110 data
  GSE2827 Plymouth Marine Laboratory [Andrew Morby ] Allen, et al, 16549663 The response of E. coli to exposure to the bioci... polyhexamethylene biguanide commercial; Sigma-Genosy... K-12 GPL2568 data
  GSE2928 MIT [John Essigmann] Robbins-Manke, et al, 16199573 Basal gene expression in dam, dam mutS, and mutS... dam; mutS commercial; Affymetrix G... K-12 GPL73 data
  GSE2999 MIT [John Essigmann] Robbins-Manke, et al, 16199573 Cisplatin-induced gene expression in DNA adenine... cisplatin; dam; mutS commercial; Affymetrix G... K-12 GPL73 data
  GSE3105 Universite de Sherbrooke [Susan Gottesman] Masse, et al, 16199566 Effect of small RNA RyhB on global iron use in E... FeSO4; fur; ryhB overexpress... commercial; Affymetrix; ... K-12 GPL199 data
  GSE3123 Stanford University School of Medicine [Stanley Cohen]<... Lee, et al, 11952897 RNase G complementation of rne null mutation ide... mRNA decay; rne; rng non-commercial; microarray K-12 GPL2755 data
  GSE3250 University of California Los Angeles [Jim Liao] Kao, et al, 16141204 Glucose to acetate transition Time Series; glucose-acetate... non-commercial; Sigma-Ge... K-12 GPL2815 GPL2816 GPL2817 GPL2818 data
  GSE3283 University of Michigan [Arkady Khodursky] Tani, et al, 12374860 Adaptation to famine leucine; stress; lrp non-commercial; microarray K-12 GPL2833 data
  GSE3437 UCSF [Carol Gross] Rhodius, et al, 16336047 Time course analysis of genes regulated by E. co... Time Series; rpoE overexpres... non-commercial; microarray K-12 GPL2926 GPL2927 GPL2928 data
  GSE3514 Texas A & M University [Tom Wood] Herzberg, et al, 16385049 Differential gene expression of ydgG mutant ydgG commercial; Affymetrix; ... K-12 GPL199 data
  GSE3591 University of Birmingham [Jeff Cole] Constantinidou, et al, 16377617 A reassesment of the FNR regulon and the effects... aerobic; anaerobic; NO2; NO3... non-commercial; UBEC Arr... K-12 GPL1246 GPL3051 data
  GSE3665 MIT [Greg Stephanopoulos] Alper, et al, 17292651 Global transcriptional machinery engineering in ... ethanol; stress commercial; Affymetrix; ... K-12 GPL3154 data
  GSE3905 Texas A&M University [Tom Wood] Domka, et al, 17222132 Temporal Biofilm Expression of E. coli K-12 afte... Time Series; biofilm; suspen... commercial; Affymetrix; ... K-12 GPL199 data
  GSE3937 Texas A&M University [Tom Wood] Domka, et al, 16597943 E. coli K-12 yliH and yceP biofilm expression re... biofilm; yceP; yliH commercial; Affymetrix; ... K-12 GPL199 data
  GSE4112 Stanford University [Stanley Cohen] Miller, et al, 14526013 DpiA overexpression dpiA overexpression non-commercial; microarray K-12 GPL2833 GPL3397 data
  GSE4321 University of California San Francisco [Carol Gross] Nonaka, et al, 16818608 Time course analysis of genes regulated by E. co... Time Series; rpoH overexpres... non-commercial; Sigma-Ge... K-12 GPL3500 data
  GSE4344 Stanford University School of Medicine [Stanley Cohen]<... Bernstein, et al, 12119387 Global analysis of mRNA decay and abundance in E... mRNA decay; LB; M9 non-commercial; microarray K-12 GPL2820 GPL2821 data
  GSE4357 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Ampicillin treatment (100 ug/ml) in M9 + glucose, timecourse Time Series; ampicillin non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4358 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Ecoli_CaCl2 wash vs before wash, timecourse Time Series; CaCl2; glycerol non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4359 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Recovery from stationary phase in LB + glucose at OD 0.4 Time Series; recovery from s... non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4360 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Indol-acrylate (10 ug/ml) treatment in Bonner-V... Time Series; indole acrylate non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4361 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Indol-acrylate (15 ug/ml) treatment in Bonner-V... Time Series; indol acrylate non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4362 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Kanamycin treatment (100 ug/ml) in M9 + glucose, timecourse Time Series; Kanamycin non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4363 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Recovery from stationary phase in LB + 0.2 % glucose Time Series; recovery from s... non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4364 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Recovery from stationary phase in LB + glucose at OD 1.0 Time Series; recovery from s... non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4365 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Balanced growth of Ecoli MG1655/pTrc99a(NOX+) at... growth rate comparison; NADH... non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4366 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Balanced growth of Ecoli MG1655/pTrc99a(NOX-) at... growth rate comparison; NADH... non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4367 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Ecoli C600 Norfloxacin treatment (50 ug/ml) in ... Time Series; norfloxacin non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4368 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Ecoli C600 (gyrArparCr) Norfloxacin treatment (1... Time Series; norfloxacin; gy... non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4369 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Ecoli C600 (gyrArparCr) Norfloxacin treatment (5... Time Series; norfloxacin; gy... non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4370 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Recovery from stationary phase in 10 mM Na-P (pH 7.5) Time Series; recovery from s... non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4371 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Recovery from stationary phase in 10 mM Na-P (pH... Time Series; recovery from s... non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4372 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Ecoli W3110_0.01 M sodium azide treatment vs unt... Time Series; sodium azide non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4373 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Anaerobic growth in M9 + glucose, genomic DNA reference growth rate comparison; anae... non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4374 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Anaerobic growth in M9 + glucose + fumarate,geno... growth rate comparison; anae... non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4375 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Anaerobic growth in M9 + glucose growth rate comparison; anae... non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4376 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Anaerobic growth in M9 + glucose + fumarate growth rate comparison; anae... non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4377 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Gamma treatment in Davis, timecourse Time Series; gamma irradiation non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4378 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Novobiocin treatment in LB novobiocin; acrD non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4379 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Ecoli DH5alpha, pUC overexpression in LB + Amp vs no pUC growth rate comparison; ampi... non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4380 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Stationary phase in LB, genomic DNA reference stationary phase non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4383 Stanford University School of Medicine [George Georgiou... Lee, et al, 13678585 RraA. a protein inhibitor of RNase E activity th... mRNA decay; rne; rraA; rraA ... non-commercial; microarray K-12 GPL2821 data
  GSE4394 Stanford University [Stanley Cohen ] Bernstein, et al, 14981237 Global analysis of Escherichia coli RNA degradosome function mRNA decay; pnp; rhlB; rne; ... non-commercial; microarray K-12 GPL2821 data
  GSE4408 University of Minnesota [Arkady Khodursky] Jeong, et al, 17009874 Transcriptional consequences of DNA gyrase inhibition Time Series; norfloxacin; st... non-commercial; microarray K-12 GPL1436 data
  GSE4417 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Temperature upshift in E coli gyrBT strain, time series Time Series; 42 C; gyrB non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE4511 Kenyon College [Joan Slonczewski] Maurer, et al, 15601715 pH Regulates Genes for Flagellar Motility, Catab... pH 5.0; pH 7.0; pH 8.7; aero... commercial; Affymetrix; ... K-12 GPL199 data
  GSE4556 Kenyon College [Joan Slonczewski] Hayes, et al, 17026754 pH and Anaerobiosis Coregulate Metabolism, Multi... pH 5.0; pH 7.0; pH 8.7; anae... commercial; Affymetrix; ... K-12 GPL199 data
  GSE4562 Texas A&M University [Tom Wood] Lee, et al, 17511876 E. coli K-12 mutants yceP, trpE, and tnaA biofil... indole; biofilm; yceP; tnaA;... commercial; Affymetrix; ... K-12 GPL199 data
  GSE4569 Swiss Federal Institute for Aquatic Science and Technology... Berney, et al, 16913923 Gene expression of E. coli in continuous culture... UV light; evolution in chemo... commercial; MWG E. coli ... K-12 GPL534 data
  GSE4631 Institute of Food Research 16905537 Effect of ppGpp on Salmonella Typhimurium gene expression Expression profiling by array Institute of Food Resear... Salmonella enterica GPL3586 GPL3612 data
  GSE4706 Swiss Federal Institute for Aquatic Science and Technology... Franchini, et al, 16804185 Response and adaptation to growth with low gluco... low glucose; continuous cult... commercial; MWG E. coli ... K-12 GPL534 data
  GSE4724 Flanders Interuniversity Institute for Biotechnology [R... Caldara, et al, 17074904 Transcriptome analysis of the arginine regulon in E.coli arginine; argR commercial; Affymetrix; ... K-12 GPL3154 data
  GSE4735 University of Sheffield [Jeffrey Green] Partridge, et al, 16857675 E. coli Transcriptome Dynamics during the Transi... Time Series; anaerobic; aero... commercial; MWG E. coli ... K-12 GPL534 data
  GSE4778 Kenyon College [Joan Slonczewski] Kannan, et al, 18302792 Acid-Shifted Time Course of Gene Expression Prof... Time Series; pH 7.6; pH 5.5 commercial; Affymetrix; ... K-12 GPL199 data
  GSE4941 Institute of Genetics and Biophysics Adriano Buzzati Trave... Bianco, et al, 16849805 Expression data from untreated and IAA treated cells indole acetic acid commercial; Sigma-Genosy... K-12 GPL189 data
  GSE5098 University of Sheffield [Robert Poole] Pullan, et al, 17189370 Aerobic and anaerobic transcriptional responses ... NO; aerobic, anaerobic; hmp;... commercial; MWG E. coli ... K-12 GPL534 data
  GSE5177 University of Birmingham [Jon Hobman] Kershaw, et al, 15817786 The role of multi-copper oxidase CueO cueO non-commercial; Operon E... K-12 GPL1246 data
  GSE5239 Cornell University [Grzegorz Węgrzyn] Wang, et al, 17112383 Effects of the presence of ColE1 plasmid DNA in ... growth rate comparison; pOri commercial; Affymetrix; ... K-12 GPL199 data
  GSE5356 Miami University [Michael Crowder] Sigdel, et al, 16952965 Transcriptional response of E. coli to TPEN N,N,N???,N???-tetrakis(2-pyr... commercial; MWG E. coli ... K-12 GPL3995 data
  GSE5552 Texas A&M University [Jayaraman] Bansal, et al, 17591798 E coli O157:H7 w/t LB-Glu 7 hr biofilm cells wit... epinephrine; norepinephrine;... commercial; Affymetrix; ... O157:H7 GPL3154 data
  GSE5818 University of Wisconsin [Richard Burgess] Zhao, et al, 17576668 Flagellar regulon studies flhDC; fliA; FliA overexpres... commercial; Affymetrix; ... K-12 GPL199 data
  GSE5904 Texas A&M University [Tom Wood] Zhang, et al, 17293424 E. coli K-12 mutant ycfR biofilm vs wild type 15... biofilm; ycfR commercial; Affymetrix; ... K-12 GPL199 data
  GSE5905 Texas A&M University [Tom Wood] Maeda, et al, 17521447 E. coli TG1/pBS(Kan)Synhox and pBS(Kan) hydrogen production hoxEFUYH overexpression commercial; Affymetrix; ... K-12 GPL199 data
  GSE5981 University of Birmingham and Nara Insitute [Stephen Bus... Mitchell, et al, 17351046 Rsd timecourse Time series; rsd; rsd overex... non-commercial; NARA; E.... K-12 GPL4374 data
  GSE6195 Texas A&M University [Tom Wood] Lee, et al, 17483266 EHEC hydroxyindole project isatin; 7-hydroxyindole; bio... commercial; Affymetrix; ... O157:H7 GPL3154 data
  GSE6296 University of Birmingham [David Gally] Roe, et al, 17464049 Analysis of the exression and regulation of NleA... MEM-HEPES; DMEM non-commercial; Operon E... O157:H7 GPL3051 data
  GSE6425 Washington University in St. Louis [Jeffrey Gordon] Reigstad, et al, 17504765 Expression data from time courses of E. coli MG1... Time Series; anaerobic; aero... commercial; Affymetrix; ... K-12; UPEC GPL199 data
  GSE6426 Washington University in St. Louis [Jeffrey Gordon] Reigstad, et al, 17504765 E. coli expression data from gnotobiotic ceca 14... in vivo (gnotobiotic mice); ... commercial; Affymetrix; ... K-12; UPEC GPL199 data
  GSE6444 University of California San Francisco [Carol Gross] Guisbert, et al, 17158661 Steady-state analysis of genes regulated by the ... hfq; rseA; rpoE overexpression non-commercial; microarray K-12 GPL2928 GPL3500 GPL4620 data
  GSE6609 NIH [Rodney Levine] Luo, et al, 17891379 Lon Protease Promotes Survival of Escherichia co... anaerobic; aerobic; lon non-commercial; Operon E... K-12 GPL4698 data
  GSE6644 University of Sheffield [Jeff Green] Partridge, et al, 17307737 E. coli Transcriptome Dynamics during the Transi... Time series; micro-aerobic commercial; MWG E. coli ... K-12 GPL534 data
  GSE6712 Norwegian Food Research Institute [Solveig Langsrud] Bore, et al, 17379704 Adapted tolerance to Benzalkonium chloride in E. coli K12 benzalkonium chloride; benza... commercial; Sigma-Genosy... K-12 GPL189 data
  GSE6781 University of Birmingham [Chrystala Constantinidou] Filenko, et al, 17449618 The NsrR regulon of Escherichia coli K-12 20 mM trimethylamine-N-oxide... non-commercial; UBEC Arr... K-12 GPL3051 data
  GSE6836 Boston University [Tim Gardner] Faith, et al, 17214507 Large-Scale Mapping and Validation of E. coli Tr... ampicillin; norfloxacin; ara... commercial; Affymetrix; ... K-12 GPL199 data
  GSE6923 Texas A&M University [Tom Wood] Yang, et al, 18344336 E. coli K-12 wild type with R1drd19 biofilm vs w... biofilm; suspension; conjuga... commercial; Affymetrix; ... K-12 GPL199 data
  GSE6925 Brown University [Wolfgang Peti] Lee, et al, 17765265 YmgB role in biofilm formation ymgB commercial; Affymetrix; ... K-12 GPL199 data
  GSE6992 University of Massachusetts [Jeffrey Blanchard] Blanchard, et al, 14594836 Expression data from a paraquat time course expe... Time Series; paraquat; soxR commercial; Affymetrix; ... K-12 GPL3154 data
  GSE7243 Johns Hopkins University [Ying Zhang] Li, et al, 17420206 Expression data from overnight minimal medium culture phoU commercial; Affymetrix; ... K-12 GPL3154 data
  GSE7265 University of Oklahoma [Tyrrell Conway] Traxler, et al, 16467149 Time series analysis of glucose-lactose diauxie:... Time Series; diauxie; statio... non-commercial; Operon E... K-12 GPL4995 data
  GSE7326 University of Tokyo [Yoko Asakura] Asakura, et al, 19304752 Expression profiles during cell death programmed... overexpression PaeR7I r+m+ (... commercial; Affymetrix; ... K-12 GPL199 data
  GSE7398 University at Albany [Robert Osuna] Bradley, et al, 17768236 Expression data from E. coli covering four phase... Time Series; fis commercial; Affymetrix; ... K-12 GPL199 data
  GSE7439 University of Texas Southwestern Medical Center [Vaness... Kendall, et al, 17635870 Escherichia coli strain 8624 and Escherichia col... epinephrine; DPD; AI-3; luxS commercial; Affymetrix; ... O157:H7 GPL3154 data
  GSE7477 Michigan State University [Thomas Whittam] Bergholz, et al, 17967175 Global transcriptional response of Escherichia c... Time Series; stationary phas... non-commercial; Operon E... O157:H7 GPL5047 data
  GSE7573 Georgetown University [James Liao] Hyduke, et al, 17494765 Identification of NO Response Network in E. coli serine hydroxamate; DeaNO; m... non-commercial; Operon E... K-12 GPL5113 GPL5146 data
  GSE7656 Wright State University [Oleg Paliy] Gunasekera, et al, 18359805 E.coli GeneChip study of E.coli responses to osm... 0.3 M NaCl; ; 43?C versus 30?C commercial; Affymetrix; ... K-12 GPL3154 data
  GSE7885 Hokkaido University [Satoshi Okabe] Ito, et al, 17979199 Gene expression of E. coli MG1655 wild type and ... biofilm; stationary phase; r... commercial; Affymetrix; ... K-12 GPL199 data
  GSE8323 Carnegie Mellon University [Ziv Bar-Joseph] Ernst, et al, 18369434 Dynamics of Ecoli Aerobic to Anaerobic Switch Response Time series; aerobic to anae... non-commercial; microarray K-12 GPL5435 GPL5436 data
  GSE8532 Catholic University of Korea [Pil Kim] Kwon, et al, 18391462 Effect pck or ppc expression on intracellular ATP pck; ppc commercial; Digital Geno... K-12 GPL5482 data
  GSE8540 University of California Los Angeles [Jim Liao] Jarboe, et al, 18070885 Identification of GSNO response network in E. coli S-nitrosoglutathione (GSNO);... non-commercial; Operon E... K-12 GPL5113 data
  GSE8706 Texas A&M University [Tom Wood] Zhang, et al, 18309357 E. coli BW25113 yncC vs wt biofilm cells in LB 1... biofilm; yncC commercial; Affymetrix; ... K-12 GPL199 GPL3154 data
  GSE8708 Texas A&M University [Tom Wood] Garcia-Contreras, et al, 18545668 BW25113 hha mutant vs wild type biofilm cells 4h... Time Series; biofilm; hha commercial; Affymetrix; ... K-12 GPL199 data
  GSE8965 University of British Columbia [Mickael Le Gac] Le Gac, et al, 18245349 Evolution of gene expression during an adaptive ... evolution in batch culture non-commercial; Operon E... B GPL5767 data
  GSE9178 Universite de Montreal [Josee Harel] Crepin, et al, 19038054 Genome-wide transcriptional response of pstCAB mutant pstCAB commercial; Affymetrix; ... APEC GPL3154 data
  GSE9197 Smith College [Christine White-Ziegler] White-Ziegler, et al, 18174134 17526711 Gene expression in E.coli K-12 MC4100 at 37?C an... 37 C; 23 C; MC4100 non-commercial; Sigma-Ge... K-12 GPL5942 data
  GSE9203 University of Maryland [William Bentley] Li, et al, 17557827 Expression profile for early stationary phase E.... lsrR; lsrK commercial; Affymetrix; ... K-12 GPL199 data
  GSE9388 Texas A&M University [Arul Jayaraman] Bansal, et al, 18256823 VS94 SAPI AI-2 Temporal study Time series; AI-2; luxS commercial; Affymetrix; ... O157:H7 GPL3154 data
  GSE9434 Korea Advanced Institute of Science and Technology [San... Lee, et al, 18059444 Gene expression level during L-threonine production modified thr gene system commercial; Digital Geno... K-12 GPL5475 data
  GSE9495 University of Nottingham [Elizabeth Sockett] Lambert, et al, 20024656 Bdellovibrio bacteriovorus infection of E. coli Bdellovibrio infection commercial; Sigma-Genosy... S17-1 GPL189 data
  GSE9582 University of Maryland [William Bentley] Wang, et al, 16321939 luxS-Dependent Gene Regulation in Escherichia co... LB; luxS commercial; Affymetrix; ... K-12 GPL199 data
  GSE9587 University of Maryland [William Bentley] Wang, et al, 16321939 luxS-Dependent Gene Regulation in Escherichia co... LB + glucose; luxS commercial; Affymetrix; ... K-12 GPL199 data
  GSE9671 University of Montreal [France Daigle] Poirier, et al, 18725421 EDL933 in human macrophage THP-1 cells at differ... Time series; intracellular E... non-commercial; MWG E. c... O157:H7 GPL6178 data
  GSE9752 Osaka University [Toru Tobe] Abe, et al, 18222925 Transcriptomic analysis for Pch/ Ler regulon in ... ler; pch; overexpression ler... non-commercial; Osaka Un... O157:H7 GPL6228 data
  GSE9755 University of Illinois [Rod Mackie] Zoetendal , et al, 18039828 Tannin resistance strategies of Escherichia coli... tannin commercial; Affymetrix; ... K-12 GPL199 data
  GSE9814 McMaster University [Herb Schellhorn] Dong, et al, 18158608 RpoS regulation of gene expression during expone... exponential growth; rpoS commercial; Affymetrix; ... K-12 GPL199 data
  GSE9923 Texas A&M University [Tom Wood] Lee, et al, 18528414 Indole cell signaling occurs primarily at low te... AI-2; indole; biofilm; sdiA;... commercial; Affymetrix; ... K-12 GPL199 GPL3154 data
  GSE10116 Texas A&M University [Tom Wood] Garcia-Contreras, et al, 18545668 E. coli K12 Bw25113/pCA24N-hha with 2 mM IPTG vs... hha overexpression commercial; Affymetrix; ... K-12 GPL3154 data
  GSE10160 Pennsylvania State University [Sarah Ades] Laubacher, et al, 18192383 Expression of Escherichia coli treated with cefs... time series; cefsulodin; mec... commercial; Affymetrix; ... K-12 GPL199 GPL3154 data
  GSE10307 Universitat Stuttgart [Martin Siemann-Herzberg] Lemuth, et al, 18806003 Transcription analysis of E. coli processed at p... Time series; glucose limited... non-commercial; USITB Es... K-12 GPL6427 data
  GSE10319 University of Edinburgh [Andrew Roe] Tree, et al, 19635828 Transcriptional response of Escherichia coli O15... Salicylidene Acylhydrazide C... non-commercial; Operon E... O157:H7 GPL3051 data
  GSE10345 New York University School of Medicine [Evgeny Nudler]<... Cardinale, et al, 18487194 Genome-wide analysis of transcriptional terminat... bicyclomycin; nusA; nusG; O1... commercial; Affymetrix; ... K-12; O157:H7; MDS42 GPL3154 data
  GSE10855 Princeton University [Saeed Tavazoie] Tagkopoulos, et al, 18467556 MG1655 Temperature and oxygen upshift and down shift Time Series; aerobic-anaerob... non-commercial; microarray K-12 GPL6570 data
  GSE10974 Aarhus University Hospital [Peter Bross] Bross, et al, 18400758 Expression profiles of E. coli groESL(-) cells e... over production of Hsp60 and... commercial; Affymetrix; ... K-12 GPL199 data
  GSE11041 Nofima Mat [Birgitte Moen] Moen, et al, 19767843 Overlapping and unique responses of E. coli to a... Expression profiling by array non-commercial; UBEC Arr... K-12 GPL6679 data
  GSE11052 Michigan State University [Thomas Whittam] Bergholz, et al, 19346340 Gene expression induced in Escherichia coli O157... Apple juice; stationary phase Operon O157:H7 GPL5047 data
  GSE11087 University of Oklahoma [Tyrrell Conway] Traxler, et al, 18430135 E. coli Isoleucine starvation and stringent response network amino acid starvation commercial; Affymetrix; ... K-12 GPL3154 GPL6702 data
  GSE11183 Institut de Biologie Physico-Chimique [Josette Rouviere... Oberto, et al, 19194530 Identification of the Escherichia coli HU regulon exponential, transition, sta... commercial; Affymetrix; ... K-12 GPL199 data
  GSE11254 University of Oklahoma [Tyrrell Conway] Fabich, et al, 18180286 Carbon nutrition of pathogenic and commensal E. coli mouse cecal mucus; glucose custom-commercial; Affym... K-12; O157:H7; ECOR26; Nissle 1917 GPL6702 data
  GSE11463 Iowa State University [Chris Minion] Carruthers, et al, 19473256 Transcriptome analysis of Escherichia coli O157:... heat shock non-commercial; Iowa Sta... O157:H7 GPL6272 data
  GSE11562 Martin Luther University [Dietrich Nies] Helbig, et al, 18539742 response of Escherichia coli and glutathion muta... Cadmium; gshA; gshB commercial; MWG E. coli ... K-12 GPL534 data
  GSE11779 Texas A&M University [Tom Wood] Lee, et al, 19168658 Protein Engineering of the Quorum-Sensing Regula... LB IPTG; sdiA overexpression... commercial; Affymetrix; ... K-12 GPL3154 data
  GSE11894 University of Sheffield [Robert Poole] Graham, et al, 19377097 Transcriptional profiling of Escherichia coli cu... severe zinc limitation; chem... commercial; MWG E. coli ... K-12 GPL534 data
  GSE11927 University of Maryland School of Medicine [Alfredo Torr... Vazquez-Juarez, et al, 18794292 RCV02 (cadA deficient) v wild-type enterohemorrh... DMEM; cadA commercial; Affymetrix; ... O157:H7 GPL3154 data
  GSE11932 Texas A&M University [Tom Wood] Kim, et al, 19060153 Comparison between E. coli K-12 MG1655 and E. co... biofilm on LB; mazEF relBEF ... commercial; Affymetrix; ... K-12 GPL3154 data
  GSE12006 University of Oulu [Peter Neubauer] Soini, et al, 18940002 Oxygen downshift experiment with E.coli W3110 Time series; aerobic to anae... commercial; Affymetrix; ... K-12 GPL3154 data
  GSE12190 University of Tasmania [Sergey Shabala] Shabala, et al, 18793315 Ion transport and osmotic adjustment in E. coli ... 1.25 M sucrose, 1.37 M NaCl;... commercial; Affymetrix; ... K-12 GPL3154 data
  GSE12373 University of Wisconsin Oshkosh [Todd Sandrin] Worden, et al, 19220470 Effect of pH on Cadmium Toxicity in Escherichia coli 1 ug/ml CdCl2; M9 glucose non-commercial; Universi... K-12 GPL6540 data
  GSE12554 Naval Research Laboratory [Brandy Johnson] Johnson, et al, 18957286 Transcript Analysis of E. coli ATCC 35218 sugges... cranberry juice; LB commercial; Affymetrix; ... ATCC 35218 GPL3154 data
  GSE12701 Texas A and M University [Tom Wood] Kim, et al, 19060153 Comparison between E. coli K-12 BW25113 wt and E... biofilm, LB; yjgK (tabA) commercial; Affymetrix; ... K-12 GPL3154 data
  GSE12750 Texas A&M University [Tom Wood] Attila, et al, 19172264 E. coli K-12 10 uM 5-fluorouracil biofilm vs. E.... 10 uM 5-fluorouracil; biofil... commercial; Affymetrix; ... K-12 GPL3154 data
  GSE12797 McMaster University [Herb Schellhorn] Dong, et al, 18843507 Control of RpoS in global gene expression of Esc... stationary phase, M63 glucos... commercial; Affymetrix; ... K-12 GPL199 data
  GSE12831 University of Maryland School of Medicine [Vanessa Sper... Reading, et al, 20056703 The role of qseE, qseF and qseG in the regulatio... qseE qseF qseG commercial; Affymetrix; ... O157:H7 GPL3154 data
  GSE12903 Osaka University [Toru Tobe ] Nakanishi, et al, 19202100 Transcriptomic analysis for response of EHEC to... 20 mM acetate, propionate, b... non-commercial; Osaka Un... O157:H7 GPL6228 data
  GSE13048 University of Sheffield [Robert Poole] Davidge, et al, 19091747 Addition of CO-RMs to aerobically and anaerobica... CO-RMs; aerobic, anaerobic commercial; MWG E. coli ... K-12 GPL534 data
  GSE13132 Michigan State University [Tom Whittam] Vanaja, et al, 19114477 Identification of genes regulated by gadE in E. coli O157:H7 exponential phase, stationar... non-commercial; MSU E. c... O157:H7 GPL7445 data
  GSE13418 Hokkaido University [Satoshi Okabe] Ito, et al, 19376922 Gene expression of E. coli MG1655 at attachment,... biofillm, planktonic, expone... commercial; Affymetrix; ... K-12 GPL199 data
  GSE13444 Georgetown University [Jim Liao] Brynildsen, et al, 19536200 Identification of isobutanol response network of E. coli isobutanol, n-butanol, ethan... non-commercial; Operon E... K-12 GPL5113 data
  GSE13589 Hokkaido University [Satoshi Okabe] Ito, et al, 19288441 Gene expression of E. coli MG1655 pOX38Km at the... biofillm, planktonic, expone... commercial; Affymetrix; ... K-12 GPL3154 data
  GSE13666 Trinity College [Charles Dorman] Stoebel, et al, 19798444 Evolution of E. coli transcriptome under osmotic... 0.3 M NaCl; MOPS glucose wit... NimbleGen K-12 GPL7672 data
  GSE13698 Texas A&M University [Tom Wood] Lee, et al, 19919618 12 microarrays for cis-DCE mineralization and ne... stress, H2O2; ygiW ychH commercial; Affymetrix; ... K-12 GPL199 GPL3154 data
  GSE13902 Texas A&M University [Tom Wood] Sanchez-Torres, et al, 19581479 BW25113 fhlA/pCA24N-FhlA133 vs fhlA/pCA24N-FhlA ... anaerobic; FhlA133 commercial; Affymetrix; ... K-12 GPL3154 data
  GSE13982 Instituto de Tecnologia Quimica e Biologica [Ligia Sara... Nobre, et al, 19246752 Effect of carbon monoxide releasing compounds (C... carbon monoxide releasing co... commercial; Affymetrix; ... K-12 GPL3154 data
  GSE14064 Texas A&M University [Tom Wood] Ma, et al, 19601955 E. coli BW25113 ompA mutant vs wild type biofilm... biofilm, glasswool, polystyr... commercial; Affymetrix; ... K-12 GPL199 GPL3154 data
  GSE14069 Ryerson University [Debora Foster] House, et al, 19497950 Microarray Analysis of Acid-Stress Induced Chang... unadapted acute acid stress ... non-commercial; spotted ... O157:H7 GPL7001 data
  GSE14203 Texas A&M University [Tom Wood] Kim, et al, 20105222 E. coli MqsR and MqsA whole DNA microarray and n... isopropyl-B-D-thiogalactopur... commercial; Affymetrix; ... K-12 GPL199 GPL3154 data
  GSE14238 Stanford University School of Medicine [Philip Sherman]... Jandu, et al, 19293938 Expression data from E. coli O157:H7 growth in t... 5% CO2, Hep-2 commercial; Affymetrix; ... O157:H7 GPL3154 data
  GSE14472 Texas A&M University [Tom Wood] Wang, et al, 19458652 CP4-57-deficient vs. wild-type biofilm; CP4-57 commercial; Affymetrix; ... K-12 GPL3154 data
  GSE15050 University of Maryland School of Medicine [Vanessa Sper... Hughes, et al, 19696934 Bacterial Adrenergic signaling epinephrine, Al3; kpdE, qseB... commercial; Affymetrix; ... O157:H7 GPL3154 data
  GSE15059 University of Birmingham [Laura Piddock] Bailey, et al, 19759044 The transcriptomic response of E. coli to triclosan exposure 0.12 mg/L triclosan non-commercial; Operon E... K-12 GPL3051 data
  GSE15319 University of Utah [Matthew Mulvey] Bower, et al, 19255192 Conditioning of uropathogenic Escherichia coli t... acidified sodium nitrite (ASN) commercial; Affymetrix; ... UTI189 GPL3154 data
  GSE15406 NIH [Michael Cashel] Potrykus, et al, 20008510 Expression data from E. coli cells overexpressin... Isopropyl β-D-1-thiogal... commercial; Affymetrix; ... K-12 GPL3154 data
  GSE15409 University of Minnesota [Arkady Khodursky] Zare, et al, 19366454 Amino acid/Nucleotide perturbation in Escherichia coli amino acid, nucleotide non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE15533 Illinois Institute of Technology [Wei Zhang] Wang, et al, 19666735 Transcriptomic response of E. coli 0157:H7 to ox... H2O2, chlorine commercial; Affymetrix; ... O157:H7 GPL3154 data
  GSE15783 Michigan State University [Shannon Manning] Vanaja, et al, 19880650 Identification of differentially expressed genes... DMEM medium; exponential phase non-commercial; MSU E. c... O157:H7 GPL7445 data
  GSE16565 KAIST [Sang Lee] Baek, et al, 19728878 Transcriptome analysis of Escherichia coli K-12 ... time series; Methyl methanes... commercial; Digital Geno... K-12 GPL5475 data
  GSE16973 University of California Berkeley [Jay Keasling] Rutherford, et al, 20118358 Functional Genomic Study of Exogenous n-Butanol ... time series; n-butanol non-commercial; Keasling... K-12 GPL8811 data
  GSE17246 Institute of Food Research [Jay Hinton] Hamilton, et al, 20003355 The transcriptional programme of Salmonella Typh... Expression profiling by array Institute of Food Resear... Salmonella enterica GPL8849 data
  GSE17389 Michigan State University [Shannon Manning ] Abu-Ali, et al, 19892762 Transcriptional profiling of 2 outbreak strains ... Bovine mammary epithelial ce... non-commercial; MSU E. c... O157:H7 GPL7445 data
  GSE17420 McMaster University [Herb Schellhorn] Dong, et al, 19650909 Global effect of RpoS on gene expression in path... exponential, stationary; RpoS commercial; Affymetrix; ... O157:H7 GPL3154 data
  GSE17467 Michigan State University [James Riordan] Riordan, et al, 19942657 The RpoN Regulon of Escherichia coli O157:H7 logarithmic , transition; RpoN non-commercial; MSU E. c... O157:H7 GPL7445 data
  GSE17505 Clemson University [Sarah Harcum] Haddadin, et al, 15742388 Transcriptome Profiles For High-Cell-Density Rec... time series; 5 mM isopropyl-... commercial; Affymetrix; ... K-12 GPL199 data
  GSE17506 Clemson University [Sarah Harcum] Haddadin, et al, 18612598 Serine hydroxamate and the transcriptome of high... stringent response; time ser... commercial; Affymetrix; ... K-12 GPL199 data
  GSE17507 Clemson University [Sarah Harcum] Harcum, et al, 16680459 Global transcriptome response of recombinant E. ... stringent response; time ser... commercial; Affymetrix; ... K-12 GPL199 data
  GSE17584 Pennsylvania State University [Patrick Cirino] Khankal, et al, 19703305 Transcriptional effects of CRP* expression in Es... LB, Glucose; crp* commercial; Affymetrix; ... K-12 GPL3154 data
  GSE17786 University of Florida [Lonnie Ingram] Miller, et al, 19684179 Response of ethanologenic E coli strains LY180 a... 0.5 g/L furfural commercial; Nimblegen Es... B GPL9088 data
  GSE18362 Texas State University [Robert McLean] Weber, et al, 19833773 E coli MG1655 biofilm and planktonic gene expression biofilm, planktonic, serine ... commercial; Sigma-Genosy... K-12 GPL189 data
  GSE18452 Institute of Food Research [Jay Hinton] Lucchini, et al, 19843227 Role of stpA in Salmonella typhimurium Expression profiling by array Institute of Food Resear... Salmonella enterica GPL5780 GPL9091 data
  GSE18623 St Jude Children's Research Hospital [Charles Rock] Zhu, et al, 19854834 E. coli gene expression following CHIR-090 treatment 1 ug/ml CHIR-090 commercial; Affymetrix; ... K-12 GPL3154 data
  GSE18852 Texas AandM University [Tom Wood] Kim, et al, 19909729 E. coli BW25113 K-12 hfq vs. wild-type persister hfq commercial; Affymetrix; ... K-12 GPL3154 data
  GSE18935 National Cancer Institute [Susan Gottesman] Moon, et al, 19889087 Effects on small RNA MgrR in Escherichia coli mgrR, pBR-Plac-mgrR commercial; Affymetrix; ... K-12 GPL3154 data
  GSE19370 University of Sheffield [Samantha McLean] McLean, et al, 20427277 Transcriptional profiling of E. coli after addit... 300uM peroxynitrite, 300uM H... commercial; MWG E. coli ... K-12 GPL534 data
  GSE19655 NICHD [Gisela Storz] Durand, et al, 20070527 Reprogramming of anaerobic metabolism by the FnrS Small RNA 0.2% arabinose; pFnrS commercial; Affymetrix; ... K-12 GPL3154 data
  GSE19760 Michigan State University [Robert Britton] Schaefer, et al, 20150236 E.coli DH5alpha cells: reuterin-treated vs. untr... reuterin (3-hydroxypropional... non-commercial; MSU E. c... K-12 GPL7445 data
  GSE19879 Princeton University [Arkady Khodursky] Sangurdekar, et al, 20132444 Thymine starvation and limitation in Escherichia... time series; zero thymine me... non-commercial; Sigma-Ge... K-12 GPL3503 data
  GSE20305 Max Planck Institute [Lothar Willmitzer] Jozefczuk, et al, 20461071 Time resolved response of E. coli to 4 different... time series; 200 ug/ml H2O2,... custom-commercial; in si... K-12 GPL10041 data
  GSE20374 Technical University of Denmark [Peter Jensen] Holm, et al, 20299454 Metabolic and transcriptional response to cofact... mid-exponential phase on MOP... commercial; Affymetrix; ... K-12 GPL3154 data
  GSE20397 Michigan State University [Shannon Manning] Abu-Ali, et al, 20422047 Transcriptomes of genetically distinct E. coli O... Bovine mammary epithelial ce... non-commercial; MSU E. c... O157:H7 GPL7445 data
  GSE20413 University of Texas Southwestern Medical Center [Vaness... Habdas, et al, 20494990 EHEC and K-12 E. coli QseD mutant analysis DMEM, LB; qseD commercial; Affymetrix; ... K-12; O157:H7 GPL3154 data
  GSE21194 Princeton University [Saeed Tavazoie] Goodarzi, et al, 20531407 Gene expression profiling of the ethanol toleran... 1.5% ethanol; minimal glucos... custom-commercial; spott... K-12 GPL10286 data
  GSE21995 University of Colorado [Ryan Gill] Singh, et al, 20581184 Gene expression profile of an ldhA-pflB- double ... microaerobic, M9 medium 10 g... commercial; Affymetrix; ... K-12 GPL199 data
Recs: 193
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OU Bioinformatics Core Facility @ Advanced Center for Genome Technology | updated:20 May 2011