OUBCF
Welcome to the E. coli Community's Gene Expression Database (GenExpDB)
Hosted by the University of Oklahoma
Instructions:  Search E. coli GenExpDB using either gene, b-number or location (multiple entries separate by comma or space).
         Example: edd • b3517 • laca,lacy,lacz • 416366 (location) • reset
Search by: Operon Regulon Sigma Text Experiment
 
lacZ
b0344
                                                                                                                                                                                                                                                     
                                                                                                                                                                                                                                                     
                                                                                                                                                                                                                                                     
                                                                                                                                                                                                                                                     
                                                                                                                                                                                                                                                 
Heatmap Legend:    Gene Expression Ratios are displayed colorimetrically. Mouseover heatmap bar to display the experiment information, click to plot experiment data. Click Options to change display and query parameters.
 
cynX → 102 ← lacA 65 ← lacY 51 ← lacZ 122 ← lacI 76 ← mhpR 190 mhpA →
META LINKS GENE LOCUS FEATURE SYNONYMS OLD LOCUSTAG LEFT END RIGHT END DIR OPERON REGULATED BY SIGMA MULTIFUN PRODUCT FUNCTION NOTE
lacZ b0344 gene;CDS;mat_peptide ECK0341, JW0335 362455;362458 365529;365526 ccw lacZYA crp+-, hns-, lacI- rpoD 1.1.1.14, 7.1 beta-D-galactosidase enzyme; Degradation of small molecules: Carbon compounds GO_component: cytoplasm [GO ID 0005737]; GO_process: carbohydrate catabolic process [GO ID 0016052]
     
  ACCESSION     INSTITUTION_[PI]     REFERENCE     ACCESSION_TITLE     EXPERIMENT_DESIGN     ARRAY_DESIGN     STRAIN     PLATFORM   DATA
  GSE7 Stanford University School of Medicine [Charles Yanofsk... Khodursky, et al, 11027315 Tryptophan metabolism response in E. coli Time Series; L-tryptophan; i... non-commercial; microarray K-12 GPL16 GPL17 data
  GSE9 Stanford University [Justin Courcelle] Courcelle, et al, 11333217 UV Exposure in Wild-Type and SOS-Deficient E. coli Time Series; UV light; stres... non-commercial; microarray K-12 GPL17 GPL18 data
  GSE33 NIDDK [Daniel Camerini-Otero] Khil, et al, 11967071 E. coli response to MMC Time Series; mitomycin C; st... commercial; Sigma-Genosy... K-12 GPL102 data
  GSE533 University of California Irvine [Albert Bennett] Riehle, et al, 12672900 High temperature adapted coli expression evolution in chemostat at 41... commercial; Sigma-Genosy... B GPL189 data
  GSE1121 University of California San Diego [Bernhard Palsson] Covert, et al, 15129285 changes of global gene expression in E. coli dur... aerobic; anaerobic; oxygen s... commercial; Affymetrix; ... K-12 GPL199 data
  GSE1154 Institut fur Genetik [Christian Schloetterer] Harr, et al, 16981998 16432259 F plasmid induced changes in expression levels in E. coli F-plasmid in MG1655, DH5-alpha commercial; Affymetrix G... K-12 GPL73 data
  GSE1421 University of Birmingham [David Grainger] Grainger, et al, 15466047 MelR experiment 1 melibiose non-commercial; Operon E... K-12 GPL1246 data
  GSE1730 University of Minnesota [Arkady Khodursky] Jeong, et al, 15535862 mRNA abundance from wild type norfloxacin; gyrA non-commercial; microarray K-12 GPL1436 data
  GSE1780 University of Birmingham [Jon Hobman ] Kershaw, et al, 15817786 The expression profile of Escherichia coli K-12 ... copper non-commercial; Operon E... K-12 GPL1246 data
  GSE1981 MIT [Anthony Sinskey] Boccazzi, et al, 15821913 Gene Expression profiles of E.coli grown in LB a... minimal medium non-commercial; 50mers o... K-12 GPL1325 data
  GSE2037 University of Wisconsin-Madison [Frederick Blattner] Liu, et al, 15705577 carbon utilization in E. coli glucose; glycerol; succinate... commercial; Affymetrix; ... K-12 GPL199 data
  GSE2095 University of Sheffield [Robert Poole] Flatley, et al, 15647275 Transcriptional responses of Escherichia coli to... S-nitrosoglutathione; aerobi... commercial; MWG E. coli ... K-12 GPL534 data
  GSE2129 University of Sheffield [Robert Poole] Flatley, et al, 15647275 Transcriptional responses of Anaerobically grown... S-nitrosoglutathione; anaero... commercial; MWG E. coli ... K-12 GPL534 data
  GSE2140 Mcardle Laboratory for Cancer Research [Richard Burgess... Zhao, et al, 15757896 sigma32 over-expression in E. coli Time Series; rpoH overexpres... commercial; Affymetrix; ... K-12 GPL199 data
  GSE2694 University of Minnesota [Arkady Khodursky] Martinez-Vaz, et al, 15929794 Comparison of IS5 Deletion mutant to E.coli Moti... insH; non-motile mutant non-commercial; microarray K-12 GPL2101 GPL2109 GPL2110 data
  GSE2827 Plymouth Marine Laboratory [Andrew Morby ] Allen, et al, 16549663 The response of E. coli to exposure to the bioci... polyhexamethylene biguanide commercial; Sigma-Genosy... K-12 GPL2568 data
  GSE2928 MIT [John Essigmann] Robbins-Manke, et al, 16199573 Basal gene expression in dam, dam mutS, and mutS... dam; mutS commercial; Affymetrix G... K-12 GPL73 data
  GSE2999 MIT [John Essigmann] Robbins-Manke, et al, 16199573 Cisplatin-induced gene expression in DNA adenine... cisplatin; dam; mutS commercial; Affymetrix G... K-12 GPL73 data
  GSE3105 Universite de Sherbrooke [Susan Gottesman] Masse, et al, 16199566 Effect of small RNA RyhB on global iron use in E... FeSO4; fur; ryhB overexpress... commercial; Affymetrix; ... K-12 GPL199 data
  GSE3123 Stanford University School of Medicine [Stanley Cohen]<... Lee, et al, 11952897 RNase G complementation of rne null mutation ide... mRNA decay; rne; rng non-commercial; microarray K-12 GPL2755 data
  GSE3250 University of California Los Angeles [Jim Liao] Kao, et al, 16141204 Glucose to acetate transition Time Series; glucose-acetate... non-commercial; Sigma-Ge... K-12 GPL2815 GPL2816 GPL2817 GPL2818 data
  GSE3283 University of Michigan [Arkady Khodursky] Tani, et al, 12374860 Adaptation to famine leucine; stress; lrp non-commercial; microarray K-12 GPL2833 data
  GSE3437 UCSF [Carol Gross] Rhodius, et al, 16336047 Time course analysis of genes regulated by E. co... Time Series; rpoE overexpres... non-commercial; microarray K-12 GPL2926 GPL2927 GPL2928 data
  GSE3514 Texas A & M University [Tom Wood] Herzberg, et al, 16385049 Differential gene expression of ydgG mutant ydgG commercial; Affymetrix; ... K-12 GPL199 data
  GSE3591 University of Birmingham [Jeff Cole] Constantinidou, et al, 16377617 A reassesment of the FNR regulon and the effects... aerobic; anaerobic; NO2; NO3... non-commercial; UBEC Arr... K-12 GPL1246 GPL3051 data
  GSE3665 MIT [Greg Stephanopoulos] Alper, et al, 17292651 Global transcriptional machinery engineering in ... ethanol; stress commercial; Affymetrix; ... K-12 GPL3154 data
  GSE3905 Texas A&M University [Tom Wood] Domka, et al, 17222132 Temporal Biofilm Expression of E. coli K-12 afte... Time Series; biofilm; suspen... commercial; Affymetrix; ... K-12 GPL199 data
  GSE3937 Texas A&M University [Tom Wood] Domka, et al, 16597943 E. coli K-12 yliH and yceP biofilm expression re... biofilm; yceP; yliH commercial; Affymetrix; ... K-12 GPL199 data
  GSE4112 Stanford University [Stanley Cohen] Miller, et al, 14526013 DpiA overexpression dpiA overexpression non-commercial; microarray K-12 GPL2833 GPL3397 data
  GSE4321 University of California San Francisco [Carol Gross] Nonaka, et al, 16818608 Time course analysis of genes regulated by E. co... Time Series; rpoH overexpres... non-commercial; Sigma-Ge... K-12 GPL3500 data
  GSE4344 Stanford University School of Medicine [Stanley Cohen]<... Bernstein, et al, 12119387 Global analysis of mRNA decay and abundance in E... mRNA decay; LB; M9 non-commercial; microarray K-12 GPL2820 GPL2821 data
  GSE4357 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Ampicillin treatment (100 ug/ml) in M9 + glucose, timecourse Time Series; ampicillin non-commercial; Sigma-Ge... K-12