OUBCF
Welcome to the E. coli Community's Gene Expression Database (GenExpDB)
Hosted by the University of Oklahoma
Instructions:  Search E. coli GenExpDB using either gene, b-number or location (multiple entries separate by comma or space).
         Example: edd • b3517 • laca,lacy,lacz • 416366 (location) • reset
Search by: Operon Regulon Sigma Text Experiment
 
lacZ
b0344
                                                                                                                                                                  
                                                                                                                                                                  
                                                                                                                                                                  
                                                                                                                                                                  
                                                                                                                                                                  
Heatmap Legend:    Gene Expression Ratios are displayed colorimetrically. Mouseover heatmap bar to display the experiment information, click to plot experiment data. Click Options to change display and query parameters.
 
cynX → 102 ← lacA 65 ← lacY 51 ← lacZ 122 ← lacI 76 ← mhpR 190 mhpA →
META LINKS GENE LOCUS FEATURE SYNONYMS OLD LOCUSTAG LEFT END RIGHT END DIR OPERON REGULATED BY SIGMA MULTIFUN PRODUCT FUNCTION NOTE
lacZ b0344 gene;CDS;mat_peptide ECK0341, JW0335 362455;362458 365529;365526 ccw lacZYA crp+-, hns-, lacI- rpoD 1.1.1.14, 7.1 beta-D-galactosidase enzyme; Degradation of small molecules: Carbon compounds GO_component: cytoplasm [GO ID 0005737]; GO_process: carbohydrate catabolic process [GO ID 0016052]
     
  ACCESSION     INSTITUTION_[PI]     REFERENCE     ACCESSION_TITLE     EXPERIMENT_DESIGN     PLATFORM     ARRAY_DESIGN   DATA
  GSE7 Stanford Microarray Database (SMD) [Yanofsky] Khodursky, et al, 11027315 Tryptophan metabolism response in E. coli Time Series; L-tryptophan; i... GPL16 GPL17 non-commercial; microarray data
  GSE9 Stanford Microarray Database (SMD) [Justin Courcelle] Courcelle, et al, 11333217 UV Exposure in Wild-Type and SOS-Deficient E. coli Time Series; UV light; stres... GPL17 GPL18 non-commercial; microarray data
  GSE33 NIDDK [Daniel Camerini-Otero] Khil, et al, 11967071 E. coli response to MMC Time Series; mitomycin C; st... GPL102 commercial; Sigma-Genosy... data
  GSE533 University of California Irvine [Albert Bennett] Riehle, et al, 12672900 High temperature adapted coli expression evolution in chemostat at 41... GPL189 commercial; Sigma-Genosy... data
  GSE1121 University of California at San Diego [Bernhard Palsson... Covert, et al, 15129285 changes of global gene expression in E. coli dur... aerobic; anaerobic; oxygen s... GPL199 commercial; Affymetrix; ... data
  GSE1154 Institut fur Genetik [Christian Schloetterer] Harr, et al, 16981998 16432259 F plasmid induced changes in expression levels in E. coli F-plasmid in MG1655, DH5-alpha GPL73 commercial; Affymetrix G... data
  GSE1730 University of Minnesota [Arkady Khodursky] Jeong, et al, 15535862 mRNA abundance from wild type norfloxacin; gyrA GPL1436 non-commercial; microarray data
  GSE1780 University of Birmingham [Jon Hobman ] Kershaw, et al, 15817786 The expression profile of Escherichia coli K-12 ... copper GPL1246 non-commercial; Operon E... data
  GSE1981 MIT [Anthony Sinskey] Boccazzi, et al, 15821913 Gene Expression profiles of E.coli grown in LB a... minimal medium GPL1325 non-commercial; 50mers o... data
  GSE2037 University of Wisconsin-Madison [Frederick Blattner] Liu, et al, 15705577 carbon utilization in E. coli glucose; glycerol; succinate... GPL199 commercial; Affymetrix; ... data
  GSE2095 University of Sheffield [Robert Poole] Flatley, et al, 15647275 Transcriptional responses of Escherichia coli to... S-nitrosoglutathione; aerobi... GPL534 commercial; MWG E. coli ... data
  GSE2129 University of Sheffield [Robert Poole] Flatley, et al, 15647275 Transcriptional responses of Anaerobically grown... S-nitrosoglutathione; anaero... GPL534 commercial; MWG E. coli ... data
  GSE2140 Mcardle Laboratory for Cancer Research [Richard Burgess... Zhao, et al, 15757896 sigma32 over-expression in E. coli Time Series; rpoH overexpres... GPL199 commercial; Affymetrix; ... data
  GSE2694 University of Minnesota [Arkady Khodursky] Martinez-Vaz, et al, 15929794 Comparison of IS5 Deletion mutant to E.coli Moti... insH; non-motile mutant GPL2101 GPL2109 GPL2110 non-commercial; microarray data
  GSE2827 Plymouth Marine Laboratory [Andrew Morby ] Allen, et al, 16549663 The response of E. coli to exposure to the bioci... polyhexamethylene biguanide GPL2568 commercial; Sigma-Genosy... data
  GSE2928 Massachusetts Institute of Technology [John M Essigmann... Robbins-Manke, et al, 16199573 Basal gene expression in dam, dam mutS, and mutS... dam; mutS GPL73 commercial; Affymetrix G... data
  GSE2999 Massachusetts Institute of Technology [John M Essigmann... Robbins-Manke, et al, 16199573 Cisplatin-induced gene expression in DNA adenine... cisplatin; dam; mutS GPL73 commercial; Affymetrix G... data
  GSE3105 Universite de Sherbrooke [Susan Gottesman] Masse, et al, 16199566 Effect of small RNA RyhB on global iron use in E... FeSO4; fur; ryhB overexpress... GPL199 commercial; Affymetrix; ... data
  GSE3123 Stanford Microarray Database (SMD) [Stanley Cohen] Lee, et al, 11952897 RNase G complementation of rne null mutation ide... mRNA decay; rne; rng GPL2755 non-commercial; microarray data
  GSE3250 University of California, Los Angeles [Jim Liao] Kao, et al, 16141204 Glucose to acetate transition Time Series; glucose-acetate... GPL2815 GPL2816 GPL2817 GPL2818 non-commercial; Sigma-Ge... data
  GSE3283 Stanford Microarray Database (SMD) [Arkady Khodursky] Tani, et al, 12374860 Adaptation to famine leucine; stress; lrp GPL2833 non-commercial; microarray data
  GSE3437 UCSF [Carol Gross] Rhodius, et al, 16336047 Time course analysis of genes regulated by E. co... Time Series; rpoE overexpres... GPL2926 GPL2927 GPL2928 non-commercial; microarray data
  GSE3514 University of Connecticut [Thomas Wood] Herzberg, et al, 16385049 Differential gene expression of ydgG mutant ydgG GPL199 commercial; Affymetrix; ... data
  GSE3591 University of Birmingham [Jeff Cole] Constantinidou, et al, 16377617 A reassesment of the FNR regulon and the effects... aerobic; anaerobic; NO2; NO3... GPL1246 GPL3051 non-commercial; Operon E... data
  GSE3665 MIT [Greg Stephanopoulos] Alper, et al, 17292651 Global transcriptional machinery engineering in ... ethanol; stress GPL3154 commercial; Affymetrix; ... data
  GSE3905 Texas A & M University [Tom Wood] Domka, et al, 17222132 Temporal Biofilm Expression of E. coli K-12 afte... Time Series; biofilm; suspen... GPL199 commercial; Affymetrix; ... data
  GSE3937 Texas A & M University [Tom Wood] Domka, et al, 16597943 E. coli K-12 yliH and yceP biofilm expression re... biofilm; yceP; yliH GPL199 commercial; Affymetrix; ... data
  GSE4112 Stanford Microarray Database (SMD) [Stanley Cohen] Miller, et al, 14526013 DpiA overexpression dpiA overexpression GPL2833 GPL3397 non-commercial; microarray data
  GSE4321 UCSF [Carol Gross] Nonaka, et al, 16818608 Time course analysis of genes regulated by E. co... Time Series; rpoH overexpres... GPL3500 non-commercial; Sigma-Ge... data
  GSE4344 Stanford Microarray Database (SMD) [Stanley Cohen] Bernstein, et al, 12119387 Global analysis of mRNA decay and abundance in E... mRNA decay; LB; M9 GPL2820 GPL2821 non-commercial; microarray data
  GSE4357 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Ampicillin treatment (100 ug/ml) in M9 + glucose, timecourse Time Series; ampicillin GPL3503 non-commercial; Sigma-Ge... data
  GSE4358 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Ecoli_CaCl2 wash vs before wash, timecourse Time Series; CaCl2; glycerol GPL3503 non-commercial; Sigma-Ge... data
  GSE4359 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Recovery from stationary phase in LB + glucose at OD 0.4 Time Series; recovery from s... GPL3503 non-commercial; Sigma-Ge... data
  GSE4360 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Indol-acrylate (10 ug/ml) treatment in Bonner-V... Time Series; indole acrylate GPL3503 non-commercial; Sigma-Ge... data
  GSE4361 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Indol-acrylate (15 ug/ml) treatment in Bonner-V... Time Series; indol acrylate GPL3503 non-commercial; Sigma-Ge... data
  GSE4362 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Kanamycin treatment (100 ug/ml) in M9 + glucose, timecourse Time Series; Kanamycin GPL3503 non-commercial; Sigma-Ge... data
  GSE4363 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Recovery from stationary phase in LB + 0.2 % glucose Time Series; recovery from s... GPL3503 non-commercial; Sigma-Ge... data
  GSE4364 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Recovery from stationary phase in LB + glucose at OD 1.0 Time Series; recovery from s... GPL3503 non-commercial; Sigma-Ge... data
  GSE4365 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Balanced growth of Ecoli MG1655/pTrc99a(NOX+) at... growth rate comparison; NADH... GPL3503 non-commercial; Sigma-Ge... data
  GSE4366 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Balanced growth of Ecoli MG1655/pTrc99a(NOX-) at... growth rate comparison; NADH... GPL3503 non-commercial; Sigma-Ge... data
  GSE4367 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Ecoli C600 Norfloxacin treatment (50 ug/ml) in ... Time Series; norfloxacin GPL3503 non-commercial; Sigma-Ge... data
  GSE4368 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Ecoli C600 (gyrArparCr) Norfloxacin treatment (1... Time Series; norfloxacin; gy... GPL3503 non-commercial; Sigma-Ge... data
  GSE4369 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Ecoli C600 (gyrArparCr) Norfloxacin treatment (5... Time Series; norfloxacin; gy... GPL3503 non-commercial; Sigma-Ge... data
  GSE4370 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Recovery from stationary phase in 10 mM Na-P (pH 7.5) Time Series; recovery from s... GPL3503 non-commercial; Sigma-Ge... data
  GSE4371 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Recovery from stationary phase in 10 mM Na-P (pH... Time Series; recovery from s... GPL3503 non-commercial; Sigma-Ge... data
  GSE4372 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Ecoli W3110_0.01 M sodium azide treatment vs unt... Time Series; sodium azide GPL3503 non-commercial; Sigma-Ge... data
  GSE4373 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Anaerobic growth in M9 + glucose, genomic DNA reference growth rate comparison; anae... GPL3503 non-commercial; Sigma-Ge... data
  GSE4374 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Anaerobic growth in M9 + glucose + fumarate,geno... growth rate comparison; anae... GPL3503 non-commercial; Sigma-Ge... data
  GSE4375 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Anaerobic growth in M9 + glucose growth rate comparison; anae... GPL3503 non-commercial; Sigma-Ge... data
  GSE4376 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Anaerobic growth in M9 + glucose + fumarate growth rate comparison; anae... GPL3503 non-commercial; Sigma-Ge... data
  GSE4377 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Gamma treatment in Davis, timecourse Time Series; gamma irradiation GPL3503 non-commercial; Sigma-Ge... data
  GSE4378 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Novobiocin treatment in LB novobiocin; acrD GPL3503 non-commercial; Sigma-Ge... data
  GSE4379 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Ecoli DH5alpha, pUC overexpression in LB + Amp vs no pUC growth rate comparison; ampi... GPL3503 non-commercial; Sigma-Ge... data
  GSE4380 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Stationary phase in LB, genomic DNA reference stationary phase GPL3503 non-commercial; Sigma-Ge... data
  GSE4383 Stanford Microarray Database (SMD) [George Georgiou] Lee, et al, 13678585 RraA. a protein inhibitor of RNase E activity th... mRNA decay; rne; rraA; rraA ... GPL2821 non-commercial; microarray data
  GSE4394 Stanford Microarray Database (SMD) [Stanley Cohen ] Bernstein, et al, 14981237 Global analysis of Escherichia coli RNA degradosome function mRNA decay; pnp; rhlB; rne; ... GPL2821 non-commercial; microarray data
  GSE4408 University of Minnesota [Arkady Khodursky] Jeong, et al, 17009874 Transcriptional consequences of DNA gyrase inhibition Time Series; norfloxacin; st... GPL1436 non-commercial; microarray data
  GSE4417 University of Minnesota [Arkady Khodursky] Sangurdekar, et al, 16626502 Temperature upshift in E coli gyrBT strain, time series Time Series; 42 C; gyrB GPL3503 non-commercial; Sigma-Ge... data
  GSE4511 Kenyon College [Joan Slonczewski] Maurer, et al, 15601715 pH Regulates Genes for Flagellar Motility, Catab... pH 5.0; pH 7.0; pH 8.7; aero... GPL199 commercial; Affymetrix; ... data
  GSE4556 Kenyon College [Joan Slonczewski] Hayes, et al, 17026754 pH and Anaerobiosis Coregulate Metabolism, Multi... pH 5.0; pH 7.0; pH 8.7; anae... GPL199 commercial; Affymetrix; ... data
  GSE4562 Texas A&M University [Tom Wood] Lee, et al, 17511876 E. coli K-12 mutants yceP, trpE, and tnaA biofil... indole; biofilm; yceP; tnaA;... GPL199 commercial; Affymetrix; ... data
  GSE4569 Eawag [Thomas Egli] Berney, et al, 16913923 Gene expression of E. coli in continuous culture... UV light; evolution in chemo... GPL534 commercial; MWG E. coli ... data
  GSE4706 Eawag [Thomas Egli] Franchini, et al, 16804185 Response and adaptation to growth with low gluco... low glucose; continuous cult... GPL534 commercial; MWG E. coli ... data
  GSE4724 Flanders Interuniversity Institute for Biotechnology [R... Caldara, et al, 17074904 Transcriptome analysis of the arginine regulon in E.coli arginine; argR GPL3154 commercial; Affymetrix; ... data
  GSE4735 University of Sheffield [Jeffrey Green] Partridge, et al, 16857675 E. coli Transcriptome Dynamics during the Transi... Time Series; anaerobic; aero... GPL534 commercial; MWG E. coli ... data
  GSE4778 Kenyon College [Joan Slonczewski] Kannan, et al, 18302792 Acid-Shifted Time Course of Gene Expression Prof... Time Series; pH 7.6; pH 5.5 GPL199 commercial; Affymetrix; ... data
  GSE4941 Sigma-Genosys [Roberto Defez] Bianco, et al, 16849805 Expression data from untreated and IAA treated cells indole acetic acid GPL189 commercial; Sigma-Genosy... data
  GSE5098 University of Sheffield [Robert Poole] Pullan, et al, 17189370 Aerobic and anaerobic transcriptional responses ... NO; aerobic, anaerobic; hmp;... GPL534 commercial; MWG E. coli ... data
  GSE5177 University of Birmingham [Jon Hobman] Kershaw, et al, 15817786 The role of multi-copper oxidase CueO cueO GPL1246 non-commercial; Operon E... data
  GSE5239 Cornell University [Grzegorz Węgrzyn] Wang, et al, 17112383 Effects of the presence of ColE1 plasmid DNA in ... growth rate comparison; pOri GPL199 commercial; Affymetrix; ... data
  GSE5356 Miami University (Ohio) [Michael Crowder] Sigdel, et al, 16952965 Transcriptional response of E. coli to TPEN TPEN (zinc chelator: N,N,N\'... GPL3995 commercial; MWG E. coli ... data
  GSE5552 Texas A & M University [Jayaraman] Bansal, et al, 17591798 E coli O157:H7 w/t LB-Glu 7 hr biofilm cells wit... epinephrine; norepinephrine;... GPL3154 commercial; Affymetrix; ... data
  GSE5904 Texas A and M University [Tom Wood] Zhang, et al, 17293424 E. coli K-12 mutant ycfR biofilm vs wild type 15... biofilm; ycfR GPL199 commercial; Affymetrix; ... data
  GSE5905 Texas A&M University [Tom Wood] Maeda, et al, 17521447 E. coli TG1/pBS(Kan)Synhox and pBS(Kan) hydrogen production hoxEFUYH overexpression GPL199 commercial; Affymetrix; ... data
  GSE6195 Texas A&M University [Tom Wood] Lee, et al, 17483266 EHEC hydroxyindole project isatin; 7-hydroxyindole; bio... GPL3154 commercial; Affymetrix; ... data
  GSE6296 University of Birmingham [David Gally] Roe, et al, 17464049 Analysis of the exression and regulation of NleA... MEM-HEPES; DMEM GPL3051 UBEC, School of Bioscien... data
  GSE6425 Washington University in St. Louis [Jeffrey Gordon] Reigstad, et al, 17504765 Expression data from time courses of E. coli MG1... Time Series; anaerobic; aero... GPL199 commercial; Affymetrix; ... data
  GSE6426 Washington University in St. Louis [Jeffrey Gordon] Reigstad, et al, 17504765 E. coli expression data from gnotobiotic ceca 14... in vivo (gnotobiotic mice); ... GPL199 commercial; Affymetrix; ... data
  GSE6444 UCSF [Carol Gross] Guisbert, et al, 17158661 Steady-state analysis of genes regulated by the ... hfq; rseA; rpoE overexpression GPL2928 GPL3500 GPL4620 non-commercial; microarray data
  GSE6609 National Institute for Allergy and Infectious Diseases ... Luo, et al, 17891379 Lon Protease Promotes Survival of Escherichia co... anaerobic; aerobic; lon GPL4698 non-commercial; Operon E... data
  GSE6712 Matsfork [Solveig Langsrud] Bore, et al, 17379704 Adapted tolerance to Benzalkonium chloride in E. coli K12 benzalkonium chloride; benza... GPL189 commercial; Sigma-Genosy... data
  GSE6781 University of Birmingham [Chrystala Constantinidou] Filenko, et al, 17449618 The NsrR regulon of Escherichia coli K-12 20 mM trimethylamine-N-oxide... GPL3051 non-commercial; Operon E... data
  GSE6836 Boston University [Tim Gardner] Faith, et al, 17214507 Large-Scale Mapping and Validation of E. coli Tr... ampicillin; norfloxacin; ara... GPL199 commercial; Affymetrix; ... data
  GSE6923 Texas A & M University [Thomas Wood] Yang, et al, 18344336 E. coli K-12 wild type with R1drd19 biofilm vs w... biofilm; suspension; conjuga... GPL199 commercial; Affymetrix; ... data
  GSE6992 University of Massachusetts Amherst [Jeffrey Blanchard]... Blanchard, et al, 14594836 Expression data from a paraquat time course expe... Time Series; paraquat; soxR GPL3154 commercial; Affymetrix; ... data
  GSE7243 The Johns Hopkins University [Ying Zhang] Li, et al, 17420206 Expression data from overnight minimal medium culture phoU GPL3154 commercial; Affymetrix; ... data
  GSE7265 University of Oklahoma [Conway] Traxler, et al, 16467149 Time series analysis of glucose-lactose diauxie:... Time Series; diauxie; statio... GPL4995 non-commercial; Operon E... data
  GSE7398 University at Albany [Robert Osuna] Bradley, et al, 17768236 Expression data from E. coli covering four phase... Time Series; fis GPL199 commercial; Affymetrix; ... data
  GSE7439 University of Texas Southwestern Medical Center at Dallas ... Kendall, et al, 17635870 Escherichia coli strain 8624 and Escherichia col... epinephrine; DPD; AI-3; EHEC... GPL3154 commercial; Affymetrix; ... data
  GSE7477 Michigan State University [Thomas Whittam] Bergholz, et al, 17967175 Global transcriptional response of Escherichia c... Time Series; stationary phas... GPL5047 non-commercial; Operon E... data
  GSE7573 Georgetown University [James Liao] Hyduke, et al, 17494765 Identification of NO Response Network in E. coli serine hydroxamate; DeaNO; m... GPL5113 GPL5146 non-commercial; Operon E... data
  GSE8323 Carnegie Mellon University [Bar-Joseph] Ernst, et al, 18369434 Dynamics of Ecoli Aerobic to Anaerobic Switch Response aerobic to anaerobic shift GPL5435 GPL5436 non-commercial; microarray data
  GSE8532 Catholic Univ. of Korea [Pil Kim] Kwon, et al, 18391462 Effect pck or ppc expression on intracellular ATP pck; ppc GPL5482 commercial; Digital Geno... data
  GSE8540 University of California, Los Angeles [Jim Liao] Jarboe, et al, 18070885 Identification of GSNO response network in E. coli S-nitrosoglutathione (GSNO);... GPL5113 non-commercial; Operon E... data
  GSE8706 Texas A and M University [Tom Wood] Zhang, et al, 18309357 E. coli BW25113 yncC vs wt biofilm cells in LB 1... biofilm; yncC GPL199 GPL3154 commercial; Affymetrix; ... data
  GSE8708 Texas A and M University [Tom Wood] Garcia-Contreras, et al, 18545668 BW25113 hha mutant vs wild type biofilm cells 4h... Time Series; biofilm; hha GPL199 commercial; Affymetrix; ... data
  GSE8965 University of British Columbia [Mickael Le Gac] Le Gac, et al, 18245349 Evolution of gene expression during an adaptive ... evolution in batch culture GPL5767 non-commercial; Operon E... data
  GSE9197 Smith College [Young] White-Ziegler, et al, 18174134 17526711 Gene expression in E.coli K-12 MC4100 at 37?C an... 37 C; 23 C; MC4100 GPL5942 non-commercial; Sigma-Ge... data
  GSE9582 University of Maryland Biotechnology Institute [William... Wang, et al, 16321939 luxS-Dependent Gene Regulation in Escherichia co... luxS GPL199 commercial; Affymetrix; ... data
  GSE9587 University of Maryland Biotechnology Institute [William... Wang, et al, 16321939 luxS-Dependent Gene Regulation in Escherichia co... luxS GPL199 commercial; Affymetrix; ... data
  GSE9755 University of Illinois [Rod Mackie] Zoetendal , et al,